What’s In, What’s Out On AIP? Answers To Tricky Foods

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Tricky AIP

Are there any foods that make you go “hmmm” while following the AIP? I decided it was time to start compiling answers to these often confusing foods all in one place. Read on to get all the deets on “tricky” AIP foods. And, if you have ideas for future posts about other foods you aren’t sure about, leave me a comment. We’ll try to clarify and clear up the mysteries!

Coffee and Chocolate

Most people know that coffee and chocolate are eliminated initially on AIP, but the “why” is a source of confusion. It is not because they are “beans” and legumes are out. Coffee and chocolate are misleadingly referred to as beans, but they are actually seeds. Seeds contain protective compounds that can be awfully tough on our systems. It is also not because of caffeine content. While caffeine consumption is best kept low on AIP, it is not the basis for food eliminations.

Verdict: Coffee and chocolate are NOT elimination-phase legal.


Okay, before we get started on this one, let it be known that this is a nit-picky area of the protocol. A history lesson could be useful here. Back in the way back, when AIP was first coming on the scene, vanilla was not mentioned as a food to eliminate, it just rested in a no-man’s land. In fact, some of us who started the protocol in those early days never eliminated vanilla at all, as it was not mentioned. Later, it was defined by Dr. Sarah Ballantyne (in her book, The Paleo Approach) that vanilla bean, along with other fruit or berry-derived spices, should be avoided during elimination phase, because the seeds of these plants are ground up with the spice. This allowed for gluten-free vanilla extract (where the alcohol will cook off, so best for hot-preparation recipes) or grain-free, sugar-free vanilla powder (which works for cold preparation recipes). In some cases, those in the AIP community use the seeds scrapped from the inside of a vanilla bean, since they can be consumed without chewing them, like many of the seeds in elimination-friendly fruits (more on that below).

Verdict: Gluten-free vanilla extract (alcohol will cook off), grain-free, sugar-free vanilla powder, and possibly fresh vanilla bean scrapings are elimination-phase legal.

Fruits & Vegetable-like Fruits with Seeds

This is often an area of concern for folks trying to carefully comply with the elimination phase of AIP. Foods like berries, kiwis, watermelon, pomegranate, cucumber, zucchini, and even bananas or plantains are not a problem, mainly because we don’t really chew these seeds. Dr. Ballantyne does note in The Paleo Approach that if you aren’t experiencing obvious improvement using AIP, you might consider these small seeds. Why consider them? Because, they do contain small amounts of protease inhibitors. Proteases are a group of many kinds of a digestive enzyme that helps us digest and break apart proteins. For a host of complex reasons, very sensitive individuals might consider this with even the consumption of very small seeds, like those found in the above mentioned foods, if they are having trouble improving their health on the protocol.

Verdict: Fruits and vegetable-like fruits with seeds are elimination-phase legal.

Beans, Peas, and Other Foods from the Legume Family

There’s actually a lot to cover in this category, so let us take it one at a time.

  • Legumes with Edible Pods — This includes green beans, scarlet runner beans, sugar snap peas, snow peas, peas, etc. Like vanilla, when AIP first came on the scene, this was not a specific elimination and was very much viewed as a gray-area. Later, Dr. Ballantyne clarified that while generally not a problem, initial elimination with early reintroduction was wise, due to lectin content. If you want some clarity on lectins, check out this article.
    Verdict: Legumes with edible pods are NOT elimination-phase legal.
  • Carob — Carob is a legume with an edible pod, BUT it gets a pass. Why? Because we only consume the ground up pod, not the seeds, as a chocolate substitute. If carob seems to bother you, it may be the fact that it is a high-FODMAP food and smaller servings may work better for you. It is a food that is recommended in The Paleo Approach to consume in moderation anyway.
    Verdict: Carob is elimination-phase legal.
  • Jicama — Jicama is part of the larger legume family as well, however, like carob, it gets a pass. Why? Because we only consume the tuberous root.
    Verdict: Jicama is elimination-phase legal.
  • Rooibos Tea — Again, rooibos is part of the larger legume family, but gets a pass. In this case, we only consume the leaves. It should be noted that, like carob, it is recommended to consume rooibos tea in moderation.
    Verdict: Rooibos tea is elimination-phase legal.
  • Bean or Pea Sprouts — Surprise, these are not okay. The problem is that concentrations of lectins are still pretty high in the sprouts.  You might think this would apply to rooibos too, but mature leaves are less problematic.
    Verdict: Bean or pea sprouts are NOT elimination-phase legal.

Mucilaginous Foods

This category includes aloe vera, slippery elm, chia, and flaxseed, all of which produce thick, mucous-like gels. Dr. Ballantyne recommends a great deal of caution with these foods for a number of reasons; they can hinder digestion, in some cases are high in phytic acid or high in phytoestrogens, and are shown to modulate the immune system. All of these effects can be problematic for those with autoimmune disease.

Verdict: Aloe vera, slippery elm, chia, and flaxseed are NOT elimination-phase legal.


This one confuses lots of folks. Peppercorns come from trees or shrubs and are their fruit, hence why they are removed like other fruit and berry-based spices. Black, white, and green peppercorns all come from the same tree (color is the result of harvesting or treatment processes), while pink peppercorns can come from a different tree family. The heat from this spice is not the same as the heat from nightshade peppers — it is from a chemical called piperine, not capsaicin. In The Paleo Approach, it is recommended to be cautious with pepper and eliminate initially, with a likely early reintroduction. In the early days of AIP, it was one of those foods that was not initially eliminated, but later clarified.

Verdict: Peppercorns are NOT elimination-phase legal.

Sweet Potatoes

Folks, let’s put this one to bed…sweet potatoes are not the same as white potatoes. It is not part of the nightshade family, unlike the white potato, which is a nightshade. Sweet potato is a starchy root veggie, different from a yam, but both very nutritious. The flesh can be beige, white, red, purple, yellow or orange, but again, flesh color, even white or purple, does not mean it is part of the nightshade potato family (which we eliminate).

Verdict: Sweet potatoes (and their often mistaken cousin, yams) are elimination-phase legal.


Okay, this is going to ruffle feathers, but let’s clear this one up. Coconut is really different from tree nuts. The coconut palm is not technically a tree, it’s related to grass. All the tree nut allergy folks should now try to calm down (everyone who is trying to get offended, breathe deep…I am in no way insinuating a tree nut allergy is not life-threateningly serious). Dr. Ballantyne recommends that we use moderation with whole coconut and coconut products, due to phytic acid and very high inulin fiber content. This moderation caution doesn’t apply to coconut oil which doesn’t contain phytic acid or inulin fiber.

Verdict: Coconut is elimination-phase legal.


Stevia is a sugar substitute extracted from the leaves of a plant. Lots of folks in the larger health and wellness community looooove stevia and trumpet its amazingness far and wide. Guess what? It can mess with our hormones in a big way, which is a huge problem for those with autoimmune disease. The science here is complex, but if you want all the nitty-gritty, check out this article.

Verdict: Stevia is NOT elimination-phase legal.

Onions, Garlic, and other High-FODMAP Foods

Certain foods can be high in particular kinds of sugar (the acronym FODMAP stands for the chemical names of those sugars) that, in the case of a bacterial overgrowth in the small intestine (SIBO), can be fermented by the bacteria. This causes incredible bloating, pain, nausea, flatulence, belching, diarrhea, or constipation for those with an overgrowth. Onions and garlic are among the highest-FODMAP foods and are also among the most commonly used on AIP, because we rely so much on them for flavoring. Despite this, we don’t eliminate these foods, because SIBO is not an issue across the board for those with autoimmune disease. IF you have autoimmune disease AND SIBO, it can help to temporarily eliminate or reduce FODMAP consumption, because it helps control symptoms. (Note that controlling symptoms is not the same as treating the bacterial overgrowth. SIBO cannot be treated with diet alone.)

Verdict: High-FODMAP foods are elimination-phase legal.


For those with diagnosed Celiac disease or gluten-sensitivity (all autoimmune disease has a very high association with gluten-sensitivity), there are some foods that your body may mistakenly identify as being the same as gluten and begin producing antibodies to that food. The list of the common foods associated with “mistaken identity problem” was developed by Cyrex Labs, which also has a test to help you identify if you have cross-reactivity to any of them. The standout food on the list that many people still consume during the AIP elimination phase is tapioca (the same thing as cassava or yucca). Much like the FODMAPs above, we don’t eliminate tapioca, because cross-reactivity is not an issue across the board and even if you do experience cross-reactivity, it may not be to tapioca. Additionally, some people may not tolerate cassava well due to its high-starch content, but not necessarily because their body is cross-reacting to it. If you aren’t experiencing obvious improvement using AIP, you might consider eliminating cassava to see if you do better or being tested for cross-reactivity. This article has tons of further detail.

Verdict: Cassava is elimination-phase legal.

Evening Primrose Oil

This oil is made by cold-pressing the seeds of a flowering plant. It has many therapeutic uses, most centered around female hormone balancing. However, as it is derived from a seed, it is removed during the elimination-phase of AIP. (Caution! If you’ve been prescribed Evening Primrose Oil, it is best to consult with your doctor, before eliminating it. There are possible substitutes, but those decisions should be made with a professional.)

Verdict: Evening Primrose Oil is NOT elimination-phase legal.


Tigernuts are not nuts. They are tubers which are dried after harvest and then used in a variety of ways (from “milks” to flour). They are very high in resistant starch (starch our bodies can’t digest, sometimes called “prebiotic”), which makes them a food that doesn’t work as well for some folks.

Verdict: Tigernuts are elimination-phase legal.


Pectin is a fiber found in fruits, especially apples. It is often used for thickening jams for canning and can be used in baking as a binder. It is best in moderation on AIP, because the extra fiber can be hard for some folks to digest.

Verdict: Pectin is elimination-phase legal.

Baking Soda, Baking Powder, and Cream of Tartar

Baking soda is also called sodium bicarbonate. It can be both mined and produced. Baking powder is a mixture of baking soda, an acid (usually cream of tartar), and corn starch. Both are used to make things rise and expand in baking, but baking soda is alkaline, while baking powder has some acid. Obviously, baking powder is removed on AIP due to the cornstarch, however, simply combining baking soda and cream of tartar creates baking powder.

Verdict: Baking soda and cream of tartar are elimination-phase legal, but baking powder is NOT.

Caffeinated Tea (Green or Black)

AIP is a coffee-free (see above), but not a caffeine-free protocol. Green and black teas can be consumed, but due to the caffeine it’s generally advised to drink them earlier in the day and in moderation. It is also important to read labels carefully, as many teas have soy lecithin or other additives that are avoided on AIP. If adrenal fatigue is part of your health picture, you’ll want to work to eliminate caffeine entirely.

Verdict: Caffeinated teas are elimination-phase legal.

About Angie Alt

Angie Alt is part of the blogging duo behind Autoimmune Paleo. She helps others take charge of their health the same way she took charge of her own after suffering with Celiac and other autoimmune diseases; one creative, nutritious meal at a time. Her special focus is on mixing “data with soul” by looking at the honest heart of the autoimmune journey (which sometimes includes curse words). She’s also a world traveler who has been medically evacuated from two foreign countries. Strategizing worst-case scenarios is now something of a hobby. She is a Certified Health Coach through the Institute for Integrative Nutrition and author of The Alternative Autoimmune Cookbook: Eating for All Phases of the Paleo Autoimmune Protocol. You can also find her on Instagram.


  • Laneene says

    Wow! Thanks for this post. Certainly cleared up a lot of things for me. So,so glad I found your site and am using your books. You all take the ‘scary’ out of AIP. 🙂

    • Angie Alt says

      Hahaha! Laneene, you inspired my new tag-line. “Taking the scary outta’ AIP.” Glad it helped!

  • Erin says

    There she goes, dropping mics. 🙂 Thanks for taking the time for this post, Angie. Like a boss.

    • Angie Alt says

      LOL! You are so welcome Erin. Very worthwhile research from my perspective.

  • Taryn says

    Hi Angie,

    Thank you for such an informative artical, have just recently started my aip journey and you have definitely answered a lot of my questions. I just wanted to confirm something with regards to vanilla, you say that vanilla bean scrapings are ok on aip but does that include vanilla bean paste? Thanx:)

    • Angie Alt says

      Taryn, I’m glad it helped so much! Congrats on your new journey to health! As to the paste, I can’t say for sure . . . I would really carefully read the ingredients list. My gut is that there are probably ingredients that make it a stable paste that probably aren’t very elimination phase friendly.

  • Carlle says

    What does it mean to be elimination phase legal or not? Can you say allowed or not allowed to clarify? Thanks!

    • Angie Alt says

      Whenever you see “elimination phase legal” in the post, it is allowed to eat while you are still in that phase of AIP (& will also be okay during the reintroduction phase. Whenever you see “NOT elimination phase legal” in the post, it is NOT allowed to eat while you are still in that phase of AIP (but you may be able to enjoy it again if your body successfully responds to it during the reintroduction phase).

  • Chelsey L says

    Love this post. I know it would have been insanely helpful at the beginning of my AIP journey. 🙂

    • Angie Alt says

      Right, Chelsey!? I thought the same thing while I was writing it.

  • debbie gilbertson says

    love love these articles
    i so appreciate the shares!! How about tamarind.. for sauces, and such?
    keep it comingxo

    • Angie Alt says

      I will add tamarind to a list for future “what’s in, what’s out” posts. Thanks for leaving a comment Debbie!

  • Debbie says

    Love reading your info. Thanks. I’ve been on AIP for months to see if something triggered a flare in my rheumatoid arthritis and so far nothing has but now I have terrible wind when I’m just eating meat and veggies done in coconut oil so I’m getting a little frustrated. But your posts help me know I’m doing everything right. So thanks again.

    • Angie Alt says

      You are welcome Debbie! If several months of AIP hasn’t yet helped, I would consider digging deeper w/ your doctors for root issues that might be impeding progress.

  • Camille says

    Angie, thank you for the article it’s very informative. I was bummed when I read that cassava is the same as tapioca. I had a reaction to tapioca and wanted to try cassava for baked goods or biscuits since I haven’t had a bread item in a very long time. Are you saying they are the same because they are both starches? I suppose I can try cassava even though I had a reaction to tapioca. I won’t know if it bothers me until I try it. I’m desperate for a bread item! 😀 Thank you.

    • Angie Alt says

      Tapioca is produced from cassava (also known as yucca), so they are not only both starches, but they are from the same exact plant. You are correct though. I would give it a shot & see how your body responds to the different processing.

  • LJ says

    Please break this down the verdicts a little more for me. Elimination-phase legal & NOT elimination-phase legal means what? Please explain in terms of ok to eat & not ok to eat. Thank you.

    • Angie Alt says

      Whenever you see “elimination phase legal” in the post, it is okay to eat while you are still in that phase of AIP (& will also be okay during the reintroduction phase. Whenever you see “NOT elimination phase legal” in the post, it is NOT okay to eat while you are still in that phase of AIP (but you may be able to enjoy it again if your body successfully responds to it during the reintroduction phase).

  • P. Sawyer says

    Plantains are mucilogeneous. Are they in the same category as chia?

    • Angie Alt says

      No, P. Sawyer. They are not considered a mucilogeneous food & are okay during the elimination phase.

  • Dawn says

    I recently found some plaintain chips with no added sugar or other ingredients cooked in Palm olein. Ok in the elimination phase?

    • Angie Alt says

      Dawn, thanks for commenting. I’ll add palm olein to a future “what’s in, what’s out” post.

  • Marelize Keyter says

    Have to bookmark this one.
    Five star rating!
    Thank you.

  • […] not despair over not being able to have vanilla. This post from Autoimmune Paleo came out recently that discusses some of the common foods that people may or may not think are […]

  • Brian says

    What about popcorn or coconut milk during elimination phase? Also, what can be used for sweetness, like honey or pure maple syrup?

    • Angie Alt says

      Corn is a grain, so popcorn is out during elimination phase. Coconut milk is fine as long as you tolerate it & try to avoid additives. Honey & maple syrup are fine in moderation.

  • Casey Meizinger says

    This site is amazing! As a physician and also newly diagnosed Hashimoto’s “patient”, this article was helpful on so many levels. Really looking forward to making big changes for my health. Thank you!

    • Angie Alt says

      Thanks so much for reading Casey! We love having physicians on board! Glad this article helped.

  • Shan says

    Cyrene Array 10 states that tapioca is not a gluten cross reactive food. It falls under the control for cross reactivity.
    With the mucilage producing foods why is okra considered ok, which is a high mucilagenous food, but licorice and marshmallow root are not ok?

  • Kathleen Pierson says

    Thanks so much for the information. I’m just starting with my AIP journey and I’m looking forward to the positive changes. Do you know if Arnica for pain relief is ok in the elimination phase?

  • Molly says


    I have been having problems that seem to be related to a lack of growth of any beneficial bacteria in my gut, and an overgrowth of candida and staph bacteria, resulting in beta glucaronidase being produced at high levels. My doctor gave me a list of foods that include apples, sun chokes, and brown rice, that are pre-biotic foods. He said because this is my busy time of year (I work 7 days/10 hours per day from May-November, hardly any time to cook, though I have been on AIP for 2 weeks), I should add organic brown rice back into my diet because it is a pre-biotic. Garlic and onions are also on that prebiotic list, as is eating less meat because betaG has been found to be present in people with high meat diets. However all of those things (low meat and rice for AIP and garlic and onions for FODMAP) seem to contradct the information I am finding here. I can find local organic meat easily, though it is harder to find grass fed. My symptoms are constipation and daily headaches, I have low protein absorption and high stomach pH, my mother has MS. Any info or resources on decoding the contradictions would be appreciated.

    Thank you!


  • […] The autoimmune protocol is one of the most restrictive elimination diets, as it weeds out anything that could cross-react with your antibodies, including all grains, eggs, seeds, and gums. If you’ve been diagnosed with an autoimmune condition and are experiencing advanced systems, or have very high antibody counts, a total detox like this one might be in order. Otherwise, there are some more lenient options, especially for Hashimotos-specific suffers. One category that is allowed: wild fish and seafood. Here’s a good list of frequently asked AIP questions. […]

  • Michelle says

    Thank you! I had no idea about EPO. I have been doing Aip for a week but made an error in accidental exposure something every day… So this info helps.
    I have a supplement I would like to take that includes sulfurophane from broccoli and broccoli sprout extract. Any ideas….or is there a supplement ingredient database I could refer to?

    • Angie Alt says

      You are welcome Michelle. There is no AIP supplement ingredient database, but I think if it’s just broccoli & a gel cap, you are fine.

    • Mickey Trescott says

      Hi Michelle! We don’t have a supplement database (good idea!), but if the product is made from a food that would be AIP it should be OK (like broccoli). I would check for other fillers though, that is where you can get into trouble. Good luck!

  • Susie says

    Thank you for this info. it is very helpful! What about egg’s? Where do they fit in…?

    • Mickey Trescott says

      Hi Susie, eggs are not included in the elimination diet!

  • Stacey Allen says

    Great read… I have Hashimotos and Lichen Sclerosus and have not been elimating the foods that I should have been. I have sick for many many years and have had the worst flare up ever so two weeks ago I said enough is enough… I have eliminated everything but peppercorns but every time I was eating some thing I would scratch like a made woman…. (I was starting to think I may be allergic to food ) so I think the black peppercorns might have been the problem because I didn’t know I was suppose to eliminate them and I use a lot of pepper. Going to leave it out and see what happens. On the AIP is Sole permitted?

    • Angie Alt says

      Glad this was helpful Stacey! If you are talking about sole, the fish, then yes, it’s permitted.

    • Mickey Trescott says

      Hi Stacey, you wouldn’t be the first person we’ve heard of recording to pepper – you don’t know until you try an elimination! Good luck!

  • […] This is just a quick summary of my understanding of the AIP lifestyle. The Paleo Mom, Sarah Ballantyne, is the expert. Her book, “The Paleo Approach” and blog are all really worth reading, if like me, this approach to health just makes sense. The Autoimmune Wellness Team also got me started. Their getting started guide answers so many of those initial practical questions. Also their blog really goes into detail about what you can and can’t eat. […]

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